Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs4755364 chr11:34292525 A/G 0.000145 111 14.18 15.77 0 KM Plot
LAML rs4755365 chr11:34292736 A/G 0.000118 111 13.2 16.3 0 KM Plot
LAML rs4756122 chr11:34292886 T/C 0.000118 111 13.2 16.3 0 KM Plot
LAML rs4756123 chr11:34293912 A/G 0.000118 111 13.2 16.3 0 KM Plot
LAML rs4756124 chr11:34294820 C/T 0.000118 111 13.2 16.3 0 KM Plot
LAML rs4756125 chr11:34295026 C/T 0.000118 111 13.2 16.3 0 KM Plot
LAML rs4780614 chr16:16298288 G/T 0.000128 110 17.23 10.65 0 KM Plot
LAML rs4808457 chr19:16242733 C/T 8.37E-5 109 16.23 7.13 0 KM Plot
LAML rs4808950 chr19:19518889 A/G 0.000128 111 16.3 9.13 0 KM Plot
LAML rs482731 chr13:21846075 G/A 1.31E-8 108 16.2 14.17 0 KM Plot
LAML rs4838700 chr10:134979763 G/C 6.78E-5 108 16.77 16.3 3 KM Plot
LAML rs4838701 chr10:134979764 G/T 6.07E-5 109 16.3 19.33 3 KM Plot
LAML rs4841012 chr8:8551710 C/A 6.31E-5 110 15.23 16.23 4.08 KM Plot
LAML rs4841013 chr8:8552013 A/G 6.31E-5 110 15.23 16.23 4.08 KM Plot
LAML rs4843159 chr16:86570907 A/T 2.99E-5 111 0.52 19.33 13.1 KM Plot